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The Marchantia polymorpha pangenome reveals ancient mechanisms of plant adaptation to the environment
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Igor Grigoriev
… Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial … help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special … The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … user-available API’s offer a space to not just store data, but for the community to discuss those data and make …
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Tracing the Evolution of Shiitake Mushrooms
… the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … and their evolution could provide strategies for converting plant waste into sugars for  biofuel production. …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, … biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing …
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Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components … to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, … Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes …
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