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DAP-seq Drives Robust Mapping of Gene Regulation
… the simultaneous profiling of multiple species; stricter filtering criteria provides a robust community dataset of … regulatory elements while avoiding technical variability between separate experiments. DAP-seq has revealed nearly … sometimes in a way that’s almost like flipping a switch between which TF is in charge,” Greenblum said, citing …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… Integrating Collaborations for User Science” (FICUS) call between the JGI and the  Environmental Molecular Sciences … This NEON-focused webinar complements a  recent webinar co-hosted by the JGI and EMSL inviting researchers to apply for … for Structural Molecular Biology .  Watch this webinar hosted by EMSL to learn more about BioSANS. Letters of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more … domains every virus carries, and who is their likely host. We’ve made all of that information fully free and …
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Kjiersten Fagnan
… head.  Dr. Fagnan is also a co-PI for the National Microbiome Data Collaborative where she leads infrastructure … E.M., Anubhav, Auberry, D. et al. The National Microbiome Data Collaborative: enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). … Selected Publications …
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A Sorghum Pangenome Opens More Doors to Discovery
… Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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MGM Workshop at Fisabio Summer School 2026
… research results in genomics, metagenomics and the human microbiome. The workshop will train participants in … training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Rekha Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… bogs also serve the ecosystem by minimizing flood risks and filtering water. Peat formed there over thousands of years …
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Taking Stock of the Known and Unknown Microbial Space
… a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all … The information gained from understanding the interactions between microbes, hosts, and their environments could be applied to multiple …
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Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et
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The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial and … each strain. “This has been a very fruitful collaboration between JGI and DSMZ overall, resulting not only in a … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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