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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of … and other staff gathered at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as representatives …
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Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize
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Refining the Process of Identifying Algae Biotechnology Candidates
… biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest for use as …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI …
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Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  … book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … to experimentally determine that Nanohaloarchaeota are symbionts, rather than free-living organisms as had been … of soil-sediment environments, water and air-atmosphere with the humans and the biosphere), including the global …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can thrive in changing conditions. A … of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less … was by way of the Fonds de recherche du Québec - Nature et Technologies (FRQNT) for Québec Océan and an FRQNT Team …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, … that is transferable to other systems, expanding the technologies available for other JGI users outside the realm …
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