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Tina Clarke
… (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area … Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June 2017 – present Berkeley National …
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New Research Sheds Light on Diversity in the Deep Sea
… deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are ocean-floor openings in the … extreme conditions. They identified 511 new or recently discovered genera of bacteria and archaea. Many of the … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations … into the nuclear genome over evolutionary time. They also discovered more than 6,000 mitochondrial sequences …
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Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific …
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead … Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic …
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How Maize Makes An Antibiotic Cocktail
… it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a plethora of … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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The endosymbiotic box of protective tricks
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … characterize viral-host interactions. The team discovered that the mat’s viruses specialize to single … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the number of known high … contigs were considered to be complete genomes, and their discovery has extended the possible virophage genome size … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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