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… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and Roux, …

… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …

… techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome evolution in a pan-genomic context. … manipulation in the laboratory because of its compact genome, diploid nature, self compatibility, rapid generation …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …

… shrubby grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … high-quality reference sequence of the complex switchgrass genome. The reference genome built off more than a decade of …

… Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as …

… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …

… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus … is still in development and not available for download. 9.  Q: Can I upload my own sequences? A: We can add external …