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SPRUCE-ing Up Science
… Originally from northern California and one of the first students to participate in the DOE Joint Genome … experience sitting on the [Walnut Creek] campus … It was a resource-rich environment,” Lawrence said. While interning, … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … the Lab. “This project represents part of our long term efforts to contribute towards a diverse workforce and … be a part of it all. Among them was Travis Lawrence , the first graduate student intern from the 2014 cohort. After …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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iPHoP: A Matchmaker for Phages and their Hosts
… helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … .  Through this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the … makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . Byline: Menaka …
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Tracking the Origins of Methane-Producing Microbes
… cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … acetoclastic. All three pathways require the gene cluster for methane production known as Mcr. Until recently, the Mcr … observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with genetic …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … their gene content and their genetic sequences. Roux was first author on a study featuring a new program called iPHoP …
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Computationally Classifying Fungal Lifestyles
… known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … Genomes Project, which aims to provide a reference genome for each of the fungal families. Researchers had access to … genomes, they also built a high-quality phylogenetic tree for  Dothideomycetes . The data allowed the team to …
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Igor Grigoriev
… of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … Moscow, Russia PhD in Molecular Biology, Research Institute for Genetics and Selection of Industrial Organisms, Moscow, … in computational structural genomics, University of California, Berkeley, CA …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, 2024. The FICUS call … Neutron Scattering (BioSANS) instrument at the Center for Structural Molecular Biology (CSMB) at Oak Ridge … Introduction to the Facilities Integrating Collaborations for User Science (FICUS) Call Karolina Michalska , Advanced …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The … (RH-Seq). Strains of S. cerevisiae and S. paradoxus were first used to create a sterile interspecific hybrid. In this … led to very poor heat tolerance. This represents a first-ever case of complex genotype-to-phenotype mapping …
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Leo Baumgart
… biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new genomic technologies, … integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods into …
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