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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … seagrasses, considered marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So … In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational … After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … The proposal targets the CSP focus area in plant microbiomes, as well as those in inter-organismal …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy … This research project was supported by a grant from Santa Barbara Cottage …
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VEGA Symposium
… – $250 Students & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & Postdocs – $250   Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) … of virus-host interactions and phage-based technologies for microbiome manipulation, the VEGA symposium represents a …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me … one that incorporates big data. A large part of my project this summer was utilizing a high performance cluster …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics … genomes and those external genomes that enable JGI CSP projects – please first contact us at [email protected] … the Principal Investigator of the corresponding genome projects as they may coordinate users in the community …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In … production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE … at the JGI as part of a 2014 Community Science Program project. The results revealed that at each of eight genes, …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team … to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since …
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