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The Power of One, Amplified
… In recent years, advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly …
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Finding the Fermenters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … metabolism from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … (gene expression), and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome … locations to thoroughly characterize the archaeal lineage, information that they believe will lend insights into …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community …
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Making a Lichen Together
… a lichen’s genomes and transcriptomes could help inform efforts at bioengineering symbiotic microbial … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …
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How Maize Makes An Antibiotic Cocktail
… as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … by a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a …
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Charting Progress toward Professional Goals
… on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help … scientist Deanna Beatty sat down with interns hosted at the JGI through three different internship programs – some … Deanna Beatty, and I'm a genomic data scientist here at the JGI, and really happy to be here to talk with some of the …
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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants thrive under challenging conditions could inform the development of resilient crop varieties able to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds …
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Defining a Pan-Genome for Antarctic Archaea
… better understand how they’ve adapted to these conditions, information that could have biotechnological applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in  Marchantia  and in flowering plant lineages.   With the information about  Marchantia -specific innovations and …
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