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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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Seven genome sequences of bacterial, environmental isolates from Pony Lake, Antarctica.
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Eight genome sequences of bacterial, environmental isolates from Canada Glacier, Antarctica
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Genome sequence of Nitrosopumilus adriaticus CCS1 assembled from an ammonia-oxidizing enrichment culture
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Eight genome sequences of bacterial environmental isolates from Marr Pond, Antarctica
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following … of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing … regulation at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional …
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Microorganisms thriving together as communities
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The Power of One, Amplified
… For example, they showed that the composition of the community was similar across sequencing approaches, that … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large …
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Nikos Kyrpides
… Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior …
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Soil virus offers insight into maintaining microorganisms
… to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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