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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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JGI Announces 2026 New Investigator Portfolio
… The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with a … aligns with the DOE’s Biological and Environmental Research program missions.  Below find a list of researchers whose … in the October 2026 review. You can also find more information about the JGI’s  various proposal calls here. …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two …
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Leo Baumgart
… technologies, integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods into … sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. … of California, San Diego Postdoctoral training in bioinformatics, Lawrence Berkeley National Lab …
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John Vogel
… joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular …
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The Expanding Universe of Methane Metabolisms in Archaea
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … related to known methanogens. With the help of this information, the researchers found evolutionary … found on early Earth.”  Through the JGI Community Science Program, Inskeep and McKay recovered metagenome-assembled …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of interest.” The combination of field data and genetic information has allowed the research team to associate … he added. Jeremy Schmutz , head of the  JGI Plant Program , drew parallels between these  common gardens and …
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JGI announces 2025 Functional Genomics awardees
… genomics research from scientists who translate genomic information into biological function. Through our  CSP … of Energy's Biological and Environmental Research (BER) program, these projects integrate cutting-edge genomic data …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced …
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Site-Selective C–H Halogenation Using Flavin-Dependent Halogenases Identified via Family-Wide Activity Profiling
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