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Marine Microbe Contains Multitudes
… the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes in the … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (Berkeley Lab), through the JGI Community Science Program . The metagenomes were also processed using the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … transformed, traits that make them easy to work with bioinformatically and in the laboratory. “We are fortunate … the study, partly enabled by the JGI’s  Community Science Program , the team generated reference genomes for  B. …
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DOE Metrics
… hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators (PIs), Co-PIs, and collaborators. *Unique users are counted once, even though an individual may have … target in Q2 is due to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down …
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The Power of One, Amplified
… In recent years, advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Robert Bowers , a JGI scientist within the Microbial Program, led the genomic analyses to compare the resulting …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In addition to … Yasuo Yoshikuni, head of the JGI’s DNA Synthesis Science program, underscored the value of taking a look at the AT … metabolism, this team built a phylogenetic tree using bioinformatic software called FastTree and identified 62 …
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Waiting to Respire
… (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic … the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. Department of Energy … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research scientist Frederik Schulz in …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages … the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … diverse biological and environmental samples in support of user science.  Capabilities offered by the platform are a …
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Nick Everson
… Selected for the 2012 LBNL “Emerging Leader Program” at the UC Berkeley Haas School of Business Served …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Marcel Huntemann (Cross-field)  Natalia Ivanova (Biology and Biochemistry)  Nikos Kyrpides (Biology and Biochemistry)  Dan Rokhsar (Cross-field)  Simon … on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses.  …
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Building Wet and Dry Lab Skills
… project - they also worked with Sharon Greenblum from the User Support Analysis team to analyze plant microbiome data via programming languages like Python. The more specific goal of … Hi. My name is Zyiah Mikes. I'm a rising senior majoring in Biology at Alabama A&M. And I'm a summer intern for Sharon …
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2025 Progress Report
… how their laboratory and data science efforts support users, advance foundational science and enable biotechnology … Mission  As a U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental Research program, the Joint Genome Institute provides advanced …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… valuable because in this time that I’ve been in my PhD program, I’ve been really focused with academia. And so this … with big data, but something that I learned from this program was how to use Python, um, from the week long Python … other tools that I can use to, um, perform computational biology.  Eric Wu : From the internship I learned to work as …
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