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New Research Sheds Light on Diversity in the Deep Sea
… crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still … how life thrives in extreme environments. They also produce a range of novel enzymes and other biomolecules that … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic algae. But human-induced climate change , a new study suggests, is displacing … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… understanding of the terpene synthase gene family across eucalypt lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Eelgrass Proves to Be Much Younger Than We Thought
… when and how eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time estimates for major colonization … also shows the younger meadows in the Atlantic ocean are much less diverse than their Pacific Ocean ancestors — …
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Disclaimer
… Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … With respect to documents available from this server, neither the United … or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would …
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Leo Baumgart
… the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the … pipelines to transition bench-scale methods into production workflows. He developed and scaled the multiDAP-seq … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he … amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Huberiarchaeum would help fill in metabolic weaknesses. In such cases, these DPANN hitchhikers likely form a mutualistic …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … DNA sequence binning algorithms, allowing them to reconstruct more near-complete genomes from soil metagenomes …
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