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DOE Metrics
… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on … improving the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one …
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Building Sphagnum Genomic Resources
… developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather … change. Through the CSP, researchers are aiming to have two high quality reference genomes for peat-forming species … building on the availability of genomic information from two distinct environments, strengthen the case for Sphagnum …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Igor Grigoriev
Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, … analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program … terrestris .  Nat Biotechnol. 2011; 29: 922-927. Eastwood DC et al. The plant cell wall-decomposing machinery …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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JGI User Executive Committee Expands
Baxter is a principal investigator at the Donald Danforth Plant Science Center, where his group focuses on … has been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. … Members serve three-year terms and can serve no more than two consecutive terms.  …
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JGI Welcomes New UEC Members
… has been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. … Members serve three-year terms and can serve no more than two consecutive terms. In September, the JGI launched a … who represent the scientific areas of plant genomics, DNA synthesis and metabolomics, …
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Busting the Unbreakable Lignin
… evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … enzymes highly efficient at making use of those other two components, which requires getting through the lignin.  … User Facility at Lawrence Berkeley National Laboratory, and two DOE Bioenergy Research Centers, the Joint BioEnergy …
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JGIota: Looking Back at Methane-Making Microbes
… from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported …
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Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
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A Community Resource for Secondary Metabolite Researchers
… data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First and foremost, it is a BGC … BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. … …
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JGI@25: Studying Sorghum’s Survival Skills
… little water, full sunlight and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in … It performs C4 photosynthesis, which is the fastest way for plants to convert carbon dioxide and water into sugars and …
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