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… (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … the protein families up by environment and found only 7% of protein families were shared across all eight … that the majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences …

… mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an … copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of Plant Biology 72, 411. Gordon et al., 2020.  Gradual polyploid genome …

… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of China (2017YFC0505203, 2016YFD0600101), and the National Key Project …

To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array … Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab …

… and functional capabilities. Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a … This symposium series will provide an overview of the bacterial, archaeal and microeukaryote diversity cataloged … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …

BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …

… shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its … a new genus level member of the novel candidate phylum Goldbacteria. They’ve proposed the name  Candidatus … and Environmental Research under contract DE-FC02-07ER64494. EG is supported by the NIGMS Biotechnology …

… ran the gamut of sequencing technologies, from making a bacterial artificial chromosome library to long-read …

By studying the structure and function of a cyanobacterial protein, researchers have new insights into how … are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food … of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to …

… . The project spans 15 years and involves more than 17 research groups. The team set out to characterize the … at the expression of those genes in currently available 17 other species. And you can also access the differentially …

A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore Foundation grant …