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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … to harvest all the energy they can. The results in the study were enabled by a number of  in vitro and  in vivo … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US …
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Natural Prodcast Episode 3: The Primer, Part 3
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … Alison asked me to check her stat and she was absolutely correct. Since 2010 there have been eight new antibiotics … DAN: One of the things that keeps me awake at night, worried about my kids’ future is actually the number of …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … cotton genome ( G. raimondii ) several years ago. Studying the cotton genomes provides breeders with insights … important cattle feed crop,” noted David Stelly, another study co-author at Texas A&M University. “This report …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … existing methodologies developed for natural languages to study genomes,” Wang explained.  And since microbial genomes … Lab’s Computing Sciences Area to develop an efficient metagenome assembler capable of assembling many terabases of …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the … with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited Researchers from … doing in the Guadeloupean mangroves where it was found. The study was featured on the  New York Times 2022 List of … Woyke  was also one of three authors on a recent study that made the cover of  Nature Reviews Microbiology ,  …
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JGI Early Career Researchers Featured in mSystems Special Issue
… issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … and experimental approaches with the aim of eventually studying virus-host dynamics in nature. In the last few …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed … Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … (Berkeley Lab), to fill in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the … with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples … The researchers then pursued the Nha-C strain for further study, tagging the cells with individual fluorescent probes. …
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