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… Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … (ORNL) to make sure our computational workload can leverage future HPC systems – our data and compute challenges … assistance from mentors and a team to port their code to a new architecture. Proposals are due March 1, 2019 for the …

… Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and … microbial bioreactors. This genomic research creates new opportunities for biomanufacturing, from industrial … Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale …

… ActinoBase offers a public portal of insight into special groups of … of the bacteria potentially holds the key to discovering new antiviral medicines and treatments for infectious … are also abundant in soil and can be used as biocontrol agents and to promote plant growth. It is the largest genus …

… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … production. Building on the framework provided by our new switchgrass manuscript , we plan to use existing data as …

… an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … and interactions. Supported by JGI’s ETOP, this new tool will now be available for JGI users interested in …

… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to …

… Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual … evolved from a white paper approved through JGI’s CSP New Investigator call to a full-scale submission. She aims …

… Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Partly enabled by the JGI  Community Science Program New Investigator program , BNL scientists focused on the …

… If it looks like a duck and quacks like a duck, so the adage goes, it must be a duck. But if the duck gets infected … from The Ohio State University and the University of Michigan studying how virus infections cause significant … Matt Sullivan used an experimental approach with a marine phage-host model to study virus-host-nutrient interactions. …

… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … that the global research community can access and use to manage the information being generated across disciplines  … “When we proposed to do the Mendota time series, we knew that it was going to be more samples and more data per …

… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored …