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… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … Because microorganisms live in complex communities, like within soils or the gut, they are difficult to study … microwell plates, allowing them to be processed at a larger scale through downstream DNA purification and sequencing …

… Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in multicellular … of scientific policy, engaging in interactions with the scientific community at large. … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …

… leader in data, software, compute, and AI for large-scale genomics and lab informatics. Prior to joining JGI in … simulation and coarse-graining of biological complexity with NFsim. Nature Methods 8, 177–183 (2011).  … Selected Publications …

… root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … how poplar responds to its intimate associations with endophytes — a group whose effects on plants are still … poplar growth, the team compared poplar cuttings grown with and without an inoculation of the  M. elongata strain …

… the building blocks of many of our fuels and materials.  With an eye to harnessing these nitrogenase-like enzymes, … the enzyme operates. It works as a two-part complex, along with a regulatory accessory protein and multiple … innovation ecosystem. “At JGI, we’ve done the synthesis, metagenome mining, all the way from sequencing to functional …

… fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in … years ago. Studying the cotton genomes provides breeders with insights on crop improvements at a genetic level, … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …

… really happy today to be handing over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue … just to remind you, you can get transcripts, and show notes with links to papers around the science we talked about, at … BETSY PARKINSON: Sure. Definitely. So, I got my PhD with Paul Hergenrother at the University of Illinois at …

… be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI team has already demonstrated … first used CRAGE to engineer domesticated bacterial strains with novel biosynthetic gene clusters (BGCs). BGCs make …

… capability; no one else can do it in the world at this scale.” A bottleneck in the DAP-seq protocol, however, is … workflow that reduces the time and cost associated with this purification step, and Baumgart continued and …

… while also highlighting collaborative research of a scale exceeding a single lab’s capacity. Additionally, the … users to explore data and share reproducible analyses with collaborators and the broader community. The approved … from  Alex Harkess of Auburn University started as a small-scale white paper focused on duckweed through the  CSP New …

… to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … doesn’t yield enough gallons of fuel per acre to compete with gasoline. Yet.  In 2010, soybean became the first legume species with a published complete draft genome sequence. At the …