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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … away in wood, converting it into their own carbon-rich structures, as well as atmospheric carbon dioxide.  Summary … genus diverged roughly 28 million years ago, when the largest mammal ever, Paraceratherium, still roamed central …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on Microbial Root … …
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Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology
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Escalation in the host-pathogen arms race: A host resistance response corresponds to a heightened bacterial virulence response
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A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics … different recombination profiles. This is akin to the structure of social media networks where one social media … User Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … cells, and both organisms rearrange their cells around this structure to facilitate sharing.  Recently, researchers have … with previous studies in the same system. With the right functional characterization, those genes could become dials …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI resources, as well as target academic, governmental and non-governmental … works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT …
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Biological Consequences of Ancient Gene Acquisition and Duplication in the Large Genome of Candidatus Solibacter usitatus Ellin6076
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … These analyses provide granular insight into microbial functions, traits and competition, illuminating the inner … “ This workshop was really nice because people were given structure, but it was all about sharing ideas. All breakout …
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … to this evolutionary focus, his work on plant genomics is targeted towards the development of improved biofuel … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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