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DAS Tool for Genome Reconstruction from Metagenomes
… been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … because of its capacity to harness the strengths of multiple binning algorithms. They added that DAS Tool’s … communities into complete or near-complete genomes to aid characterization of community members and their …
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Engineering Tree Seasonal Cycles of Growth Through Chromatin Modification
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … touch with the JGI.” Mentors: Yi Zhai & John Vogel Project: Characterization of Brachypodium distachyon root … Deze Kong & Yasuo Yoshikuni Project: “ Development of a multiplex genomic integration system for the selection of …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans could do … based on their potential to efficiently degrade lignocellulose in cow rumen, essentially what makes them so …
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A call for standardized classification of metagenome projects
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … has yielded discovery of thousands of new giant viruses, rapidly expanding the diversity of the  Nucleocytoviricota …
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DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus
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Igor Grigoriev
… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced … metatranscriptomes), as well as the genomes of single cells of the uncultivated SAR324. The constellation of data …
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Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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