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Enlarging Windows into Understanding Gene Functions
… affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying array of … workflow that reduces the time and cost associated with this purification step, and Baumgart continued and expanded on the work known as biotin DAP-seq after she left …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as a saprophyte, living off decaying … root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its …
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Ian Blaby
… where he leads three groups focused on HTP DNA design and assembly, strain engineering and bioinformatic tool … positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured … Find recordings and recaps of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , … prove invaluable. By the mid-1990s, the sequencing efforts expanded beyond LANL to include resources from Lawrence …
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Dan Rokhsar
… the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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Trent Northen
Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the Joint … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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How to Target a Microbial Needle within a Community Haystack
… samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, … would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with … view of a population’s genetic makeup and identifying viruses interacting with these populations. Development of …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): …
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Supercharging SIP in the Fungal Hyphosphere
… probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 issue …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Gardeners and farmers around the country recognize that crop varieties … Innovation , and the  Joint BioEnergy Institute —have expanded the network of common gardens and are exploring … the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … contribution? This session will demonstrate to students (and their mentors) how to begin establishing a professional …
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