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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory … recognition: for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… collaboration is available for licensing. The Science In  Nature Communications , researchers describe a … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing … separating urine from other waste streams and recovering resources that could be used for products such as agricultural …
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Triggering Morel Fruiting
… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … and his patent has proven difficult to reproduce. While scientists and biotechnological engineers all over the world …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: … in oceans or soils.  A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science …
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Effects of Polar Light Cycle on Microbial Food Web
… lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … dominates these polar environments greatly contributes to our larger understanding of carbon and other nutrient cycles … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Frederik Schulz
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and … and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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Fungal Friends or Foes in Plant Roots
… and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of the key community participants and enabling future metagenomics studies.   …
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
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Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities
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Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection
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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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