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Doubling Down on Known Protein Families
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … unknowns’ because they aren’t similar to anything we’ve already defined.  “A huge percentage — around 30–50% of the … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Crysten Blaby-Haas
… engineering. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with … (2015) where she co-founded and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus Area (SFA).  … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral Researcher, …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … high-quality genomic information using minute quantities of DNA derived from individual environmental cells. The proof …
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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant … comprise a full third of each moss genome, and are almost four times the size of the next largest chromosome. As the … structure. He and JGI Plant Program head Jeremy Schmutz already see how lessons from moss sex chromosomes can be …
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JGI & KBase at PAG XXVII
… representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list … activities of plant systems that make use of these resources will present on their work. BER Plant Genomic Science …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … by the JGI through the  Community Science Program and was already available on the JGI’s  Integrated Microbial Genomes … Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative knowledge …
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Silver age of GOLD introduces new features
… Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine … a secure and reliable manner. The JGI team managing GOLD already works closely with two other DOE-funded projects — …
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DAP-seq Drives Robust Mapping of Gene Regulation
… complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing (DAP-seq), these … scale of data enabled by these approaches creates a vast resource offering researchers the ability to chart regulatory … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Busting the Unbreakable Lignin
… fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … yield fuels, and removing lignin in order to do so is a resource-intensive process. Now, a new study shows how … component, lignin, that has historically been less of a resource to be extracted and more of an obstacle to breaking …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … shifts. (C4 plants use a more efficient form of photosynthesis that reduces water loss, compared to the process …
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Webinar: PhycoCosm Tutorial
… tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are incorrect or need to be changed, please … project? A: Combination of: DOE mission relevance Science User community – trying to produce resources for …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… food webs in cold, but fecund polar waters. “A lot of our food comes from the North Atlantic, North Pacific and … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in …
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