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Nikos Kyrpides
… microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling … University of Crete, Greece … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … in carbon fixation in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
While summer interns at the JGI from multiple programs had their own goals to achieve, they constantly … with each other on new ways of presenting and researching science. …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: Solving the Mystery of the Missing Oil
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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DOE JGI Interns Share Their Summer Experiences
DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate students … . CAMP is a statewide initiative funded by the National Science Foundation (NSF) and supports underrepresented … second year of the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program, Susannah …
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Work With the JGI! Tips for a Winning CSP Proposal
The JGI’s Community Science Program gives researchers access to all kinds of … episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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Sequencing Submission Requirements for DNA Synthesis
Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … options include SnapGene . … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> Save As …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo … the big stuff, well, the little stuff! People hold office hours and you can pop in and ask them questions about all … Wint, UC Merced JGI Mentors: Igor Grigoriev & Asaf Salamov, Fungal Program “Working at the JGI has reinforced my plans …
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2023 Progress Report
Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and resources.   Director's Perspective   Honors …
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Katherine Louie
… biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and Chemical Engineering.  DOI: …
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