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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small … Metabolic reprogramming, Schulz explained, makes the host function better under certain conditions, which then helps …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference … life cycle. For example, in the fall the plants store nitrogen in its rhizomes – in the form of the nitrogen-rich … Innovation, which is supported by the U.S. Department of Energy, Office of Science, Office of Biological and …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … It also plays an important role in soil health through nitrogen-fixation and holds clues for maximizing soybean, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under laboratory conditions, … and it gives us new insights into microbial diversity and function.” He is already finding ways to utilize the catalog …
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Soil virus offers insight into maintaining microorganisms
… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … only to cellulose.  Chitin is also a common food source for microbes living within soil. So, the chitosanase protein … why these AMGs exist in the first place, and what function other AMGs may serve.  The work was enabled in part …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among the JGI …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … A record number of primary users — 2,475 — had active proposals with us, … along with more than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 We …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected … is known about the impacts of these infections on ecosystem functions. As part of efforts to characterize global …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. … and phylogenomics) and machine learning to find novel functions that may impact microbiome structure and …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was … oceans can exert great influence on earth’s carbon and nitrogen cycles. Currently one of the best ways to study …
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Robert Bowers
… uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes … studying the diversity, physiology and community ecology of microbes sampled from the natural environment. …
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