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Metabolomics Technology Group
… and dynamic metabolite networks of environmental microbes and how they transform their environment. Research …
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Ian Blaby
… worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of … site ties heme availability to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et … in Bioengineering and Biotechnology. 11. 2023 Liu et. al., Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 …
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DAP-seq Drives Robust Mapping of Gene Regulation
… intricate network of regulatory “switches” in plants at a large scale was akin to trying to chart every electrical … have adapted the method to handle the complexity of large plant genomes. In addition: Multiplexed barcoding … for studies on organisms with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s …
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Measurement of bacterial replication rates in microbial communities
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Fungal & Algal Program
… and biogeochemistry. The program’s focus is on large-scale sequencing efforts that survey the vast …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full … and terrestrial carbon transformations.” The JGI’s large-scale call included algal genomics as a focus area, … interested in better characterizing the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and …
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JGI@25: Strengthening Soybean
… vital global source of both protein and oil was also the largest plant project completed by the JGI. It has since … rust pustules develop as the pathogen feeds on its soybean host, which is maintained alive. Once a crop is infected, … the evolution of bioinformatics.”  P. pachyrhizi has a very large and complex genome with lots of repetitions, making it …
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Leo Baumgart
… to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing … Matthew J. Blow et al. "Persistence and plasticity in bacterial gene regulation." Nature methods 18, no. 12 … Mather, and Jeff Hasty. "Synchronized DNA cycling across a bacterial population." Nature genetics 49, no. 8 (2017): …
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2025 NeLLi Symposium
… postdocs (including LBNL students and postdocs): $250      Hosted by the DOE Joint Genome Institute, the University of … together to develop recommendations for cultivating new bacteria and archaea revealed by a recent genome census . A … This symposium series will provide an overview of the bacterial, archaeal and microeukaryote diversity cataloged …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists …
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Doubling Down on Known Protein Families
… Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand … a specific environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing … that the majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences …
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