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Functional genomics gives new insights into the ectomycorrhizal degradation of chitin
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The Power of One, Amplified
… The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting nearly … BC Parks). In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Case for Conservation
… purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and … part of the flora, fire moss has adapted to conditions such as UV irradiation, heavy metal contamination, and … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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2025 NeLLi Symposium
… genomic coverage. Experts in cultivation and environmental genomics will work together to develop recommendations for … Schulz , New Lineages of Life Lead Tanja Woyke , Microbial Program Gitta Szabo , User Project Coordination Rekha … JGI Organizers …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and …
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Micro-Scale Applications Group
… The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … making quantitative measurements that answer questions such as, “who is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… evolution and rapid changes in both genome content and structure following a genome duplication event that occured … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Community Science Program. The OGG has set out to generate high-quality genome assemblies and annotations for 35 …
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Ammonia‐oxidising archaea living at low pH: Insights from comparative genomics
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iPHoP: A Matchmaker for Phages and their Hosts
… matching these viral genetic sequences to their hosts is crucial to understanding what these viruses can do. Building … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the …
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Boosting Small Molecule Production in Super “Soup”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … first author of the study, the lysate produced BDO at higher productivity rates than were noted inside the cell. … in cells often have synthesis rates on the order of one to five grams per Liter per hour,” Jewett said. “From the …
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A Grass Model to Help Improve Giant Miscanthus
… improving their abilities to adapt to extreme environments such as poor soils and drought. The reference genome for M. … the hybrid origin of giant miscanthus ( M. x giganteus ), a high-yield candidate bioenergy feedstock known for its … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Taking Stock of the Known and Unknown Microbial Space
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually captured,” said … in as a representative measure of biodiversity, they used five universally conserved, protein-coding marker genes on …
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