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A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate
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Microbial secondary metabolites: advancements to accelerate discovery towards application
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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic information into biological function. Through our CSP Functional … and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows …
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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP Functional … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six researchers …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating … sugar polymers in macroalgae and developing the first microbial platform technologies unlocking the potential of …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …
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