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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy Research Scientific Computing Center (NERSC), … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. Despite advances in sequencing technologies and … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, … Scale call. This portfolio accelerates bioenergy innovation through genomic discovery across diverse organisms and ecosystems. Scientists are engineering next-generation feedstocks through CRISPR-edited poplars with optimized …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint … researcher Joseph Napier from the Juenger lab and computational biologist Paul Grabowski of HudsonAlpha outline the …
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Evolution of a Fungal Gene Expression Regulator
… analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a … can lead to changes in protein structures and functions, but the DNA bases themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine at the 5th position on its carbon …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … to large and even giant. The genomes of giant viruses are on the order of 100 times the size of what has typically … with viruses, while the genomes of large viruses may be only 10 times larger. And yet, while they are found …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They were selected through …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … fungus  Neurospora crassa, and to identify and decide on the order in which this fungus breaks down plant cell … for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty screwdrivers, not …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can thrive in changing conditions. A recent study shows that when salinity is reduced in … Excellence Fund to Sentinelle Nord is acknowledged. Additional support was by way of the Fonds de recherche du Québec …
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The fungus that made itself at home
… habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) is so destructive … reveals the genomic changes Serpula lacrymans has undergone in adapting to manmade environments. The Impact Due to …
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