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An Automated Tool for Assessing Virus Data Quality
… for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now developed … the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome … latest release of IMG/VR . CheckV is freely available for download at: http://bitbucket.org/berkeleylab/CheckV . …
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Expanding Virophage Diversity
… Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we provide a global analysis of the … Research Scientific Computing Center (NERSC) , which is supported by the Office of Science of the U.S. Department of …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… biology professor at the Université des Antilles in Guadeloupe, in 2009. Gros’ research focuses on marine mangrove … Program and is one of the article’s senior authors. The team was also compelled to study these large bacteria in … and the Gordon and Betty Moore Foundation. “This groundbreaking discovery highlights the importance of supporting …
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Tanja Woyke Elected to American Academy of Microbiology
… eminent leaders in the field of microbiology and are relied upon for authoritative advice and insight on critical issues … genetic code. More recently reported in Nature , she led a team that reconstructed more than 2,000 genomes of large and … with Woyke, two JGI users were also elected to the AAM: fungal researcher Jason Stajich of the University of …
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Understanding Wildfire Recovery, Starting in Soil
… The Impact Healthy forests store carbon, filter water, and support all kinds of plants and animals, but with climate … common.  To complete this analysis, a multi-institutional team of researchers collected soil samples from a wildfire … interact; beyond bacteria, these samples harbored fungal genomes, including a novel Leotiomycetes species and …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… State University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and their … and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on … in particular, there’s an inflow from the mining activities upstream and downstream of the Arkansas. However, recently, …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… their diverse genomic capabilities. Summary In a project supported by the JGI Community Science Program, University of … and interactions between forests and the atmosphere. The team learned that some bacterial families carry genes for … monoterpenes such as α-pinene, as well as genes for breaking down complex plant polymers. These capabilities …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… new opportunities for biomanufacturing, from industrial enzymes discovered in extreme environments to engineered … generate over a terabase of sequence. “We are thrilled to support this year’s CSP awardees as they embark on ambitious … proposals will lead to large-scale AI-ready data to support the global research community. See below for the full …
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A Grass Model to Help Improve Giant Miscanthus
… Communications by an international, multi-institutional team. The work was a joint effort led by scientists at the … help researchers improve Miscanthus breeding programs. The team also sequenced genomes of numerous wild Miscanthus … Researchers at CABBI and elsewhere are following up on these discoveries to develop new varieties of …
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Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics … for proposals .  On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics … can scale the request size, being permitted to request up to 1.5 megabases (MB) of a synthesis, compared to 0.5 MB …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… that turns scientific presumption on its head and opens up a new avenue to explore for efficient biofuel production. …
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