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… analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI scientists … to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within complex communities, and … genomic data (MAGI) for functional annotation and identifying unknown compounds (Pactolus). …

… that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer … and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from …

… Baldrian’s team was investigating. So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) … referencing the database, Baldrian’s team was able to identify enzymes in the soil and who made them. Based on data … by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth and Sports of …

… fragments. Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of …

… U., Cadillo-Quiroz, H., Garcia-Pichel, F., & others (2015). Exometabolite niche partitioning among sympatric soil … Sun, T., Wang, T., Ruebel, O., Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance … Rubel, O., Prabhat, Mahoney, M., & Bowen, B. (2015). Identifying important ions and positions in mass spectrometry …

… filter the data for the major capsid protein (MCP) to identify NCLDV viruses. JGI researchers previously applied this …

… Xu J, Northen T, Visel A , Bristow J, Niyogi KK, Wei CL (2015).  Lineage-specific chromatin signatures reveal a … of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, Brancati … Timmermann B, Hecht J, Spielmann M, Visel A , Mundlos S. (2015).  Disruptions of topological chromatin domains cause …