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Webinar: Introducing the BioSANS capability
Biology (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory … (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat from Cone Pool in Mono County, California, scientists have used sequencing methods for the first time … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable …
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Uri Neri
… and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and …
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Back in the Lab: the 2023 Summer Intern Experience
… in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the opportunity to be fully immersed in not …
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PhycoCosm Tutorial
… analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user …
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Evolution of a Fungal Gene Expression Regulator
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of … of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering …
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I-Min (Amy) Chen
… currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … Genomes (IMG) family of systems. Before joining LBNL in 2006, she was Director of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key components of …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: … microorganisms in their community to do so.  In addition, scientists noted that the bacteria have enzymes to … … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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JGIota: Looking Back at Sequencing for Soybeans
… crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the …
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