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Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of 50 letters of intent submitted. Many of the proposals focus on harnessing genomics to developing sustainable …

… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two … Photobiont and fungus (mycobiont) live intertwined, with the photobiont transferring part of its …

… first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … inside the host’s genome, living quietly and replicating with their host indefinitely. Now, in studying a microbial …

… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators (PIs), Co-PIs, and collaborators. *Unique users are counted once, even though an individual may have … DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, metagenomic, or plant …

… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that … the planet’s nutrient cycles and are potentially of use in fields ranging from agriculture to biotechnology and …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when nutrients are … the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking …

Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the … genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the … In this workshop, we will present current and ongoing developments at the JGI and KBase toward integrative biology …

… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … scientists have identified at least 15 zealexins, they suspect there are even more to find. Zealexins are produced … Plants that the zealexin pathway has an “hourglass” shape with diverse precursors in, and many different products out, …

… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and … in their hunt for anaerobic fungi. By growing extracts without oxygen in ruminant fluid — which smells terrible … and the UCSB Connie Frank Fellowship. The authors acknowledge support from the Center for Scientific Computing from …

… training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal … Algal Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … Krizsán et al (2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex …

… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial … be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, …

… all that it has contributed, and what they’re excited about in JGI’s future. Find recordings and recaps of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , … to be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many …