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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … to changes in the environment. The Impact Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. … characterization were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … they belonged. The team worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … ignoring these difficult potential foodstuffs. The team’s findings also illustrate what’s happening on a spatial …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science … by researchers led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … samples. … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance … Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … Science Group Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User … can be  downloaded through NERSC . … The U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … the samples that were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … Development (CIRAD), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … conducted by the USA Department of Energy (DOE) Joint Genome Institute …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete genomic results from single cells. The … live in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … when  submitting a proposal . … U.S. Department of Energy Joint Genome Institute (https:// ror.org/04xm1d337), …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … capabilities to enable great science that will help solve energy and environmental challenges. In 2009, researchers at …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … Nature Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … . … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The … functions is part of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … … This work was supported by the U.S. Department of Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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