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A group led by JGI scientists have made strides in improving … researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … to rapidly label  E. coli  in order to monitor population dynamics in co-culture. These experiments aim to inform the …

… was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human Genome Center … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … the simplest cotton genome ( Gossypium raimondii ) several years ago.   As well as the seminal Human Genome Project DOE …

The CSP New Investigator Call is for investigators and research initiatives new to the … white papers. Applicants may submit up to two proposals per year (but may be listed as co-PI on an unlimited number of …

… for ‘plant’ and planktos for ‘wanderer’). But they vary across the global ocean. Phytoplankton communities in warmer … done through the JGI Community Science Program . Using an ecology metric called beta diversity, the team observed that … cool intermediate to the ocean’s extremes of about 28° and 97° Fahrenheit. “The study authors point to this fundamental …

A metagenomic look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, … forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under …

The PhycoCosm data portal allows anyone to freely investigate the genes of … strategic focus on exploring algal biology, diversity, and ecology. PhycoCosm has many components that make it useful … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. S.C., B.K., and I.V.G. were supported in part …

The PhycoCosm data portal allows anyone to freely investigate the genes of … strategic focus on exploring algal biology, diversity, and ecology. PhycoCosm has many components that make it useful …

Uncovering associations between plant roots and fungi that can help or … Office of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant Dikaria”. …

Harnessing BER-funded data resources, researchers built an … They also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …

… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … expediting BGC and biosynthesis research.  Summary Over the years several secondary metabolites databases have been made … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …

Machine learning methods were applied on sequenced fungal … for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could provide more … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …

… clustered the MAGs into 18,000 candidate species groups, 70% of which were novel compared over 500,000 existing genomes available at that time. “Looking across the tree of life, it’s striking how many uncultivated … .) Nayfach also worked with another team on predicting host-virus connections between all viruses in  IMG/VR (Virus) and …