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An Automated Tool for Assessing Virus Data Quality
… Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in cycling nutrients …
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Microorganisms thriving together as communities
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … that had never been mapped in this detail before.     The Impact By revealing how a single stress signal rewires a …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … with their hosts, and how those interactions may in turn impact the host communities and their roles in carbon and …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the … influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic … because we now have a new angle on how warming is impacting these marine communities,” said Mock. The … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams … An assay used for profiling transcription factor binding sites across entire …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … of both partners to better understand lichen. The Impact Lichens are a model for inter-kingdom communication …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … and assembly. Like others, our turnaround time has been impacted by the pandemic. 3. Q: What instrument / method … in Jim Moran’s presentation work?   A: As long as we can harvest the sample, then we can put it into the laser system …
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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