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Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest … of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s …

On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional … A:  When a proposal is submitted to the JGI, JGI scientists will go over the whole proposal for the technical … working to address some of the most pressing challenges of our time. For more information, please visit  …

… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … a microbial mat from Cone Pool in Mono County, California, scientists have used sequencing methods for the first time … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew …

… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced mass spectrometry …

Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan … for the overall design and implementation of computational biology and bioinformatics approaches in support of meeting …

… rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the … 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …

… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …

The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI … Posters – horizontal Posters – vertical Powerpoint (16:9)   If you have questions or need logos or templates in …

… transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of …