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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic … to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … , now with more than 15 million viral genomes. It was also key to developing the first version of the  IMG Plasmid …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the …
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Tina Clarke
Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area management and supervisors to recommend solutions and appropriate actions on diverse HR … Sonoma State University. Early on Tina knew the importance of understanding human and group behaviors as her role in HR …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists … due to its high recovery of single-cell genomes. This is key to better understanding all the organisms that live in … the pieces together and attempt to put them back into the original genomes. These metagenome-assembled genomes (MAGs) …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New Investigator call for … Discuss your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … viral genomes . The Impact The microbes that play key roles in cycling nutrients such as carbon, nitrogen and …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … Microbiology has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … genomics, the vast majority of microbes that play key roles in global biogeochemical cycles remains unexplored …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … we await the guidance from this review, I can say that a key area for the JGI’s evolution is in how we manage our …
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Integrating Experimentation with Data
… (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating Experimentation with … to stay informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user …
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2025 NeLLi Symposium
Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest … by a recent genome census . Speakers John M. Archibald (Keynote) Dalhousie University  Harriet Alexander Woods Hole …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This session will demonstrate to students (and their mentors) how to begin establishing a …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their biosynthetic logics to be …
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