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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
Learn more
A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers … (BGCs). BGCs make diverse molecules of value to both human and ecosystem health. But bacteria often fail to … have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental …
Learn more
A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … limited to: Public data: datasets associated with completed projects that are eligible for public release, have …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … seagrasses, considered marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in …
Learn more
JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics … The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … The proposal targets the CSP focus area in plant microbiomes, as well as those in inter-organismal …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of … Laccaria bicolor on MycoCosm … Laccaria bicolor has a symbiotic relationship with poplar …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new … — but the experts we were able to work with on this project to ask questions about structure and function,” … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences … from the JGI and EMSL in one proposed research project. In the same proposal, researchers can also request … Q(uestion) 1: Can researchers perform suggested treatments in the NEON sampling points? A(nswer): Michael SanClements …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research …
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