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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial … show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible …
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Yasuo Yoshikuni
… design for DOE-mission-relevant discovery and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship program … California honing their scientific skills and collaborating with their mentors and fellow interns. Inspired by the … success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on … developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, … Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored Career Development awardee 1998-2003: NSF …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of Energy …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 … one of the most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, … ago. The study shows that figure is likely closer to a mere 250,000 years — with many key colonization events in the …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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