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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … lab at UC Berkeley seeks other enzymes in the CRISPR-Cas system. For the past few years they have partnered with …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, … microfluidics at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs … wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. …
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De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … that flip genetic switches — bind DNA were limited to a few model species and involved slow, labor-intensive … with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s availability to users is a …
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MGM Workshop at Fisabio Summer School 2025
… Register here The workshop is addressed to students and professionals of biology, … in this area, by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and … of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and Rekha Seshadri. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … high-quality datasets, enabling global insights from modeling, machine learning, and subsequent experiments.  …
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MGM Workshop at Fisabio Summer School 2026
… for the workshop The MGM Workshop is Module 4 of the Fisabio Summer School.  The workshop is addressed to students … in this area, by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and … of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Rekha Seshadri and Mateus Fiamenghi …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re … , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place … from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint … foster a respectful, collaborative environment free of harassment. To uphold Berkeley Lab’s enduring 90-year legacy of … of the advisory committees serve as ambassadors and role models for the community, demonstrating the highest …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 … on how the JGI-UC Merced Intern partnership had become a “model” of sorts at the Lab. “This project represents part of …
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