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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a … that colonizes Brock and gives him super strength. For lichen, the partnership is more commonplace — though … variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for …
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JGI Workshops at PAG
… diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this … hear from researchers who are applying genomic sequence information to BER funded activities of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how …
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Project Management Office
… help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s project. See below for details on each step. … Please review our FAQ in advance … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or … also worked together on the development of a new software tool called geNomad that identifies and classifies mobile … and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.  Jeremy …
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Tanja Woyke
… was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont … J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major journals and funding … organelles. Science 376:1453 Schulz et al. 2022. Giant virus biology and diversity in the era of genome-resolved …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo … developed thousands of DNA constructs encoding a molecular tool to repress targeted genes in the organism. The team …
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Computationally Classifying Fungal Lifestyles
… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … data from newly sequenced genomes, they also built a high-quality phylogenetic tree for  Dothideomycetes . The data …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, JGI User … University of California, Davis proposes to develop high quality reference genomes for 10 individuals from each of …
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to … Interspaced Short Palindromic Repeats) is the leading tool for accurately editing genomes, its effectiveness has … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that there is … Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the upper … find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University … biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, … methods in conjunction with microfluidics into a powerful tool to address many of the research questions discussed,” …
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