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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … accurately editing genomes, its effectiveness has historically been limited due to the lack of robust tools available …
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … could lead to the discovery of genes that could be used for multiple biotechnological applications. These …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary components of hardy …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … as genomes sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described … a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … so thoroughly that they lyse the cell — a process called lytic infection. But some viruses are also able to …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … produced in environments without oxygen through a process called methanogenesis. Methanogenic microorganisms therefore …
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Supercharging SIP in the Fungal Hyphosphere
The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published … did not. This is normally an arduous wet lab process. Typically, after incubating microbial communities with labeled …
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Calculating the Costs of Multiple Switchgrass Gene Copies
A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … Switchgrass has multiple naturally occurring ploidy levels, called cytotypes, across the species. These are primarily …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  Environmental Microbiome . “Before JGI was involved, I was not sure we could even complete …
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JGI Interns at UC Merced Earn CAMP Merit Awards
As part of the ongoing partnership between DOE JGI and UC Merced to … Gutierrez Huerta and Bryan Rangel Alvarez, both California Alliance for Minority Participation (CAMP) students at UC Merced. …
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JGI on the 2021 Highly Cited Researchers List
JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor Grigoriev Natalia …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … at cellular scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both …
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