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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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The Expanding Universe of Methane Metabolisms in Archaea
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … the 10 MAGs reconstructed in the study, five were from undersampled or previously undescribed lineages, and the other … related to known methanogens. With the help of this information, the researchers found evolutionary …
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Learning to Look
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the biodegradation process, researchers collected microbial samples from wells at the site in 2007, 2009, and 2010. DNA … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s … time (1986) 98% of the human genome was thought to be junk DNA, so there was quite a bit of resistance to use resources … “While I never said this out loud,” Drell said, speaking to users and staff at the JGI’s 2022 User Meeting, "I think I …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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An Automated Tool for Assessing Virus Data Quality
… are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Laboratory, built off past … biosynthetic gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( …
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Annual Genomics of Energy & Environment Meeting
… us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes … invited talks emphasize how the research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and …
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Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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JGI-UC Merced Interns Share Their 2021 Experiences
… the goal of inspiring students to embark on a career in genomics and to help foster a diverse future workforce in … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage Specific … of Genus Roseovarius … Implementing a Scalable JGI-RQC Pipeline on the Cloud …
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