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New Research Sheds Light on Diversity in the Deep Sea
… the ocean through vents at temperatures that can exceed 750 degrees Fahrenheit. The minerals in these fluids include … at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome … funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… type of food that was in the contaminated aquifer in 2007 to achieve this goal. In less than four years, parts of … collected microbial samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that … Science Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of … , and  https://doi.org/10.46936/10.25585/60007554 ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …
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Effects of Polar Light Cycle on Microbial Food Web
Antarctica, was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  …
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Training the Next Generation of Talent
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Axel Visel
… served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's Deputy for Science Programs. … of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, Brancati F, … Tringe SG, Visel A , Woyke T, Wang Z, Rubin EM (2011). Metagenomic discovery of biomass-degrading genes and genomes …
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Pinning Down a Piece of Photosynthesis
… of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to … a similar region —  a domain of unknown function, DUF2470. In the world of proteins, a domain of unknown function … into focus. Blaby-Haas and her team hypothesized that DUF2470 was key to iron metabolism, and renamed it to Domain …
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A Natural Mechanism Can Turbocharge Viral Evolution
… sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is … Science Foundation’s XSEDE computing resource (award DEB170007), and through a Challenge Grant from the California …
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A Collaboration to Improve Plant Genome Annotations Across Species
… . The project spans 15 years and involves more than 17 research groups. The team set out to characterize the … at the expression of those genes in currently available 17 other species. And you can also access the differentially …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights … Office of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new potential …
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