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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used …
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Applying Viral Genomics Expertise to Understanding the Human Virome
CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , … prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly … The work is supported by NIH Common Fund grant 1U24HL175772-01. This is not the first time Kyrpides and his …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
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Forming Scientific Connections and Building Community
… “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going …
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Yasuo Yoshikuni
… of secondary metabolite biosynthetic gene clusters in bacteria, Cell Chemical Biology , 2022 … R&D100 Award … Award 2012 Jane Coffin Childs Memorial Fund, Fellow 2007-2008 Editorial board member of Synthetic Biology (Oxford …
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JGI Announces 2023 Community Science Program Awardees
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze … in sequencing secondary metabolite-producing environmental bacteria from the Tiny Earth collection. The work builds …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and transcriptome … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … Taking a conservative approach, we were able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for …
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