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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … the ocean, naively, as a sort of homogeneous medium. In reality, it’s not — there is variation of nutrients, … combined) contribute to an estimated 50 percent of the world’s fixed carbon, altering the balance of eukaryotic and …
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Gene Expression: From On-Off Switch to Dial
… lead to sustainable pathways for making high-value bioproducts including biofuels. In addition, the team says that … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary Life is all about …
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Hiroshi Otani
… of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. …
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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: … Creek Featuring a casual, candid, C-level panel discussion with local industry leaders: Arvind Gupta , Managing … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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A Plant Root Atlas for Tracking Developmental Trajectories
… patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously published datasets. The work was  recently … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school … we’re going to have this be a project, we want it to be a really comprehensive learning experience.” Over the course …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North … up the toxic chemicals is commonly known as Enhanced Reductive Dechlorination (ERD.) It is dependent on the presence … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… , employ the evolutionary strategy we are far more familiar with: differentiating into male and female sexes. For the … sequenced with sufficient resolution to analyze their structure. Scientists found both a gene likely important for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Computationally Classifying Fungal Lifestyles
… an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest … major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … Olpidium are obligate endoparasites of some common crops, such as lettuce and tobacco. Olpidium itself doesn’t cause … Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene …
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