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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … aimed specifically at “Gene function” and “Functional genomics.” We will keep updating the Gene Atlas with curated …
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User Support Analysis Group
… focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of …
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New Tricks with Old Bones
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … are at fending off the infection, and how long this evolutionary arms race has been going on.  Answering these … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her primary …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the genes in a lipid-prolific yeast. The Impact The team … MB) and NSF  1706545 (IW). HA and JW were supported by the Office of Naval Research under grant  N00014-15-1-2785 . JW …
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