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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down … 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to D.H., the GENOBIOREF …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, JGI User … call. Richard Dick of The Ohio State University aims to study plant drought resilience in the Sahel, an arid region …
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Ancient Algae Reveal Secrets of Plant Evolution
… conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … project Engineering Nitrogen Symbiosis for Africa (ENSA) currently funded through a grant to the University of …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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Virus Discoveries that Keep Getting Bigger
… single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The Impact In their existence as … This work was conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Soil virus offers insight into maintaining microorganisms
… to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses … The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … The Impact The specific protein described in  a recent study in  Nature Communications , a chitosanase, is tied to …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able …
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Supporting Global Research into Actinomycetes
… The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … a public platform built on the knowledge of researchers studying actinomycetes and the focus of a  recent paper … has launched its  Secondary Metabolite Collaboratory, currently in beta form as the group seeks early feedback. …
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Defining a Pan-Genome for Antarctic Archaea
… learned to adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some … haloarchaea across East Antarctica. The implications of the current study are important both to understanding genomic … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme …
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