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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Mapping Heat Resistance in Yeasts
… for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers … of Lawrence Berkeley National Laboratory, aim to improve our understanding of fungal diversity by sequencing genomes … and improve functional annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team …
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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal … relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress …
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JGI Hosts GPU Hackathon in May
… processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by the Oak Ridge … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI …
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Training the Next Generation of Talent
… of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus … a part of the students’ thesis,” she says. “Second, we want our students to gain the opportunity to see what research is … that would allow users to simultaneously run several programs for RNA-Seq assembly to determine which is best for …
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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was … Opportunity Program . The ETOP helps researchers develop technology that can then be made available to JGI users in …
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Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
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Genome-based analysis of virulence determinants of a Serratia marcescens strain from soft tissues following a snake bite
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Comparative Genomic Analysis of Phylogenetically Closely Related Hydrogenobaculum sp. Isolates from Yellowstone National Park
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JGI Earth Month: Wetlands Work in #TenHundredWords
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group …
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of … data are publicly available in the National Center for Biotechnology Information (NCBI) GenBank collection and on the … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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Rex Malmstrom
… his postdoctoral work at the Massachusetts Institute of Technology he developed a high throughput approach for … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of …
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