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The JGI Data Portal: Improving User Experience
… resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief … Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and data and … organisms, enabling them to conduct more complex types of research without requiring them to build their own tools to …
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When “The Blob” Made It Hotter Under the Water
… on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … samples collected before, during and after The Blob, researchers developed a preliminary model of how marine … by warming events. More time-series studies could help researchers improve predictive models on how climate change …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews … column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint … Microbiology, with an unusual opportunity: would JGI researchers consider regularly writing for the magazine’s …
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Marine Microbe Contains Multitudes
… lead author Dominique Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site … This research was supported by grants from the Simons Foundation … and the Daniel K. Inouye Center for Microbial Oceanography: Research and Education. …
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Charting Progress toward Professional Goals
… apply for internships and work onsite with an experienced researcher who serves as their mentor. By contributing to … statistics. I would say the biggest challenge for me was my research results not being the most promising. Going into … experimental and definitely wasn't. Of course, like, no research is guaranteed good results, right? So I spent a lot …
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Gut Fungi: Unexpected Source of Novel Chemicals
… at Pacific Northwest National Laboratory. The team’s research at both the JGI and EMSL was enabled by the … for User Science (FICUS) initiative, which allows researchers to more easily integrate the expertise and … This research project was supported by a grant from Santa Barbara …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… human chromosomes: Lawrence Berkeley National Laboratory researchers were studying Chromosome 5, which contains about … and diabetes mellitus. Los Alamos National Lab researchers investigated Chromosome 16, which contains about … 1997. Over the next seven years, and in collaboration with researchers at the Stanford Human Genome Center, JGI staff …
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Defining a Pan-Genome for Antarctic Archaea
… Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how these microbes … dominant haloarchaeal sequences from six hypersaline lakes, researchers focused on understanding the genomic variation … Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a haloarchaea “pan-genome.” Described …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce … With an eye to harnessing these nitrogenase-like enzymes, researchers have recently characterized a specific enzyme, … user facilities funded by the Biological and Environmental Research (BER) program, together with understanding enabled …
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Len Pennacchio
… Single Cell, DNA Synthesis, and Metabolomics) as well as Research & Development in all of these areas. Additional … 2020- National Advisory Council, National Human Genome Research Institute, NIH 2019   Lawrence Berkeley Laboratory …
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Learning to Look
… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental Genomics group . … and extrusion, and DNA replication and integration. The researchers also learned how an inovirus’ strategy of …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that … leaving potential targets for crop engineering untouched. Research recently published in  The Proceedings of the … in how an organism processes both carbon and nitrogen. This research team combined computational and experimental …
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